Stem-loop dre-mir-205

Accession

MI0001378

Description

Danio rerio dre-mir-205 precursor miRNA mir-205

Gene
family

RF00656; mir-205

Literature search

7 open access papers mention dre-mir-205
(29 sentences)

Sequence

290798 reads, 18340 reads per million, 11 experiments

aaacuacugugcauucuaUCCUUCAUUCCACCGGAGUCUGuguaguuguucaaucaGAUUUCAGUGGUGUGAAGUGUAggaaacacgga
......(((((..((((((.((((((.((((.((((((((((........))..)))))))).)))).)))))).))))))..))))).

Structure

aaacua     ca      C      U    C        --  uag 
      cugug  uucuaU CUUCAU CCAC GGAGUCUG  ug   u
      |||||  |||||| |||||| |||| ||||||||  ||    
      ggcac  aggAUG GAAGUG GGUG CUUUAGac  ac   u
-----a     aa      U      U    A        ua  uug 

Annotation confidence High

Genome context

chr23: 33290273-33290361 [+]

Mature dre-miR-205-5p

• Accession: MIMAT0001280
• Description: Danio rerio dre-miR-205-5p mature miRNA
• Sequence: 19 - UCCUUCAUUCCACCGGAGUCUG - 40
• Evidence: experimental ; cloned [1-2]

Mature dre-miR-205-3p

• Accession: MIMAT0031925
• Description: Danio rerio dre-miR-205-3p mature miRNA
• Sequence: 57 - GAUUUCAGUGGUGUGAAGUGUA - 78
• Evidence: not_experimental

References

1. PubMed ID: 12624257
   Vertebrate microRNA genes
   "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
   "Science (2003) 299:1540


2. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293