Stem-loop dre-mir-217

Accession

MI0001383

Description

Danio rerio dre-mir-217 precursor miRNA mir-217

Gene
family

RF00673; mir-217

Literature search

19 open access papers mention dre-mir-217
(37 sentences)

Sequence

441134 reads, 482.0 reads per million, 232 experiments

augagaacuuucugauguuggugaUACUGCAUCAGGAACUGAUUGGAugauauucaggagcCAUCAGUUCCUGAUGCACUCCCaucagcaucgaaaga
.......(((((.((((((((((....((((((((((((((((.((..............))))))))))))))))))....))))))))))))))).

Structure

augagaa     u          aUAC                U  Augaua 
       cuuuc gauguuggug    UGCAUCAGGAACUGAU GG      u
       ||||| ||||||||||    |||||||||||||||| ||       
       gaaag cuacgacuaC    ACGUAGUCCUUGACUA Cc      u
------a     -          CCUC                -  gaggac 

Annotation confidence High

Genome context

chr22: 28779715-28779812 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-217

Mature dre-miR-217-5p

• Accession: MIMAT0001285
• Description: Danio rerio dre-miR-217-5p mature miRNA
• Sequence: 25 - UACUGCAUCAGGAACUGAUUGGA - 47
• Evidence: experimental ; cloned [1-2]

Mature dre-miR-217-3p

• Accession: MIMAT0052740
• Description: Danio rerio dre-miR-217-3p mature miRNA
• Sequence: 62 - CAUCAGUUCCUGAUGCACUCCC - 83
• Evidence: experimental ; cloned [1-2]

References

1. PubMed ID: 12624257
   Vertebrate microRNA genes
   "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
   "Science (2003) 299:1540


2. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293