Stem-loop cbr-mir-64a

Accession

MI0001392

Description

Caenorhabditis briggsae cbr-mir-64a precursor miRNA

Sequence

ucaagaauccucggccucgccgacCAUGACACUGAAGCGUGUACGGAuggaaaguugaagccuuccguuccgcuagugugccaugcaacggcgagugccuuggcacuuug
.((((...((..((((((((((..((((.(((...((((.(.(((((.((..........)).))))).)))))...))).))))...))))))).)))..))...))))

Structure

u    aau  uc   -       -ac    A   UGA    U U     u  aaag 
 caag   cc  ggc cucgccg   CAUG CAC   AGCG G ACGGA gg    u
 ||||   ||  ||| |||||||   |||| |||   |||| | ||||| ||     
 guuu   gg  ccg gagcggc   guac gug   ucgc c ugccu cc    u
-    cac  uu   u       aac    c   uga    - u     u  gaag 

Annotation confidence Not enough data

Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 3 positions.

Genome context

chrIII: 869205-869314 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from cbr-mir-64a

Mature cbr-miR-64a

• Accession: MIMAT0001292
• Description: Caenorhabditis briggsae cbr-miR-64a mature miRNA
• Sequence: 25 - CAUGACACUGAAGCGUGUACGGA - 47
• Evidence: not_experimental

References

1. PubMed ID: 12672692
   The microRNAs of Caenorhabditis elegans
   "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
   "Genes Dev (2003) 17:991-1008