Accession
MI0001392
Description
Caenorhabditis briggsae
cbr-mir-64a precursor miRNA
Sequence
27089
reads,
2292.0
reads per million, 3 experiments
ucaagaauccucggccucgccgacCAUGACACUGAAGCGUGUACGGAuggaaaguugaagccuucCGUUCCGCUAGUGUGCCAUGCAAcggcgagugccuuggcacuuug
.((((...((..((((((((((..((((.(((...((((.(.(((((.((..........)).))))).)))))...))).))))...))))))).)))..))...))))
.((((...((..((((((((((..((((.(((...((((.(.(((((.((..........)).))))).)))))...))).))))...))))))).)))..))...))))
Structure
u aau uc - -ac A UGA U U u aaag caag cc ggc cucgccg CAUG CAC AGCG G ACGGA gg u |||| || ||| ||||||| |||| ||| |||| | ||||| || guuu gg ccg gagcggc GUAC GUG UCGC C UGCcu cc u - cac uu u AAC C UGA - U u gaag
Annotation confidence
High
Do you think this miRNA is real?
Comments
This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 3 positions.
Genome context
chrIII: 869205-869314 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from cbr-mir-64a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature cbr-miR-64a-5p
| Accession | MIMAT0001292 |
| Description | Caenorhabditis briggsae cbr-miR-64a-5p mature miRNA |
| Sequence | 25 - CAUGACACUGAAGCGUGUACGGA - 47 |
| Evidence | not_experimental |
Mature cbr-miR-64a-3p
| Accession | MIMAT0053551 |
| Description | Caenorhabditis briggsae cbr-miR-64a-3p mature miRNA |
| Sequence | 66 - CGUUCCGCUAGUGUGCCAUGCAA - 88 |
| Evidence | not_experimental |
References
|
