Stem-loop cbr-mir-83

Accession

MI0001396

Description

Caenorhabditis briggsae cbr-mir-83 precursor miRNA

Sequence

gcagaaggcaccacucgaaaaaacugaguuuauguguguacuugacggcgaucagagcaacgaucUAGCACCAUAUAAAUUCAGUGUuuucguggacagagagccaaguuu
......(((.((((..(((((.((((((((((((((.((.((.((((((.......))..)).)).)).)))))))))))))))).))))))))).......)))......

Structure

gcagaa   ------a    uc     a              u  a  u  -  --  ga 
      ggc       ccac  gaaaa acugaguuuaugug gu cu ga cg  gc  u
      |||       ||||  ||||| |||||||||||||| || || || ||  ||  c
      ccg       ggug  cuuuU UGACUUAAAUAUAC CA GA cu gc  cg  a
uuugaa   agagaca    --     G              -  C  U  a  aa  ag 

Annotation confidence Not enough data

Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 2 positions at the 3' end.

Genome context

chrIV: 11660087-11660197 [-]

Mature cbr-miR-83

• Accession: MIMAT0001295
• Description: Caenorhabditis briggsae cbr-miR-83 mature miRNA
• Sequence: 66 - UAGCACCAUAUAAAUUCAGUGU - 87
• Evidence: not_experimental

References

1. PubMed ID: 12672692
   The microRNAs of Caenorhabditis elegans
   "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
   "Genes Dev (2003) 17:991-1008