Stem-loop cbr-mir-358

Accession

MI0001403

Description

Caenorhabditis briggsae cbr-mir-358 precursor miRNA

Literature search

1 open access papers mention cbr-mir-358
(1 sentences)

Sequence

695 reads, 101.0 reads per million, 3 experiments

acuccccauucggauugaUACCCGACUUCCGGAUACCAAAUGUcauauccaacucguuucguCAAUUGGUAUCCUUAGUCGUGGucucaaucuguacacggcgagaguguugu
(((((((...((((((((.((((((((...(((((((((.((.(................).)).)))))))))..))))).))).)))))))).....)).).)))).....

Structure

-----    - -  --auu        U   -     UCC         A  U auaucca 
     acuc c cc     cggauuga ACC CGACU   GGAUACCAA UG c       a
     |||| | ||     |||||||| ||| |||||   ||||||||| || |        
     ugag g gg     gucuaacu uGG GCUGA   CCUAUGGUU AC g       c
uguug    a c  cacau        c   U     -UU         A  u cuuugcu 

Annotation confidence Medium

Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 4 positions.

Genome context

chrV: 1197871-1197983 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cbr-mir-358

Mature cbr-miR-358-5p

• Accession: MIMAT0053556
• Description: Caenorhabditis briggsae cbr-miR-358-5p mature miRNA
• Sequence: 19 - UACCCGACUUCCGGAUACCAAAUGU - 43
• Evidence: not_experimental

Mature cbr-miR-358-3p

• Accession: MIMAT0001301
• Description: Caenorhabditis briggsae cbr-miR-358-3p mature miRNA
• Sequence: 63 - CAAUUGGUAUCCUUAGUCGUGG - 84
• Evidence: not_experimental

References

1. PubMed ID: 15317971
   Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification
   "Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB"
   "RNA (2004) 10:1309-1322