miRBase entry: cbr-mir-61

Stem-loop cbr-mir-61

Accession

MI0001404

Description

Caenorhabditis briggsae cbr-mir-61 precursor miRNA

Sequence

uacuugaucggugucucgagccgaguuaaggcuaauaguccuuccgguguaugguaaUGACUAGAACCUUGACUCUGCUCgaguuacugagcucuuugaccccgccc
.......((((((.(((((((.(((((((((....(((((.(((((.....))).)).)))))...))))))))).))))))).)))))).................

Structure

----------uacuuga      u       c         cuaa     c  -   g 
                 ucggug cucgagc gaguuaagg    uaguc uu ccg u
                 |||||| ||||||| |||||||||    ||||| || ||| g
                 agucau gagCUCG CUCAGUUCC    AUCAG aa ggu u
cccgccccaguuucucg      u       U         -AAG     U  u   a

Annotation confidence Not enough data

Do you think this miRNA is real?

Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 4 positions.

Genome context

chrV: 9339579-9339685 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cbr-mir-61

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbr-miR-61

Accession	MIMAT0001302
Description	Caenorhabditis briggsae cbr-miR-61 mature miRNA
Sequence	58 - UGACUAGAACCUUGACUCUGCUC - 80
Evidence	not_experimental

References

PubMed ID: 12672692
The microRNAs of Caenorhabditis elegans
"Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
"Genes Dev (2003) 17:991-1008