Accession
MI0001404
Description
Caenorhabditis briggsae
cbr-mir-61 precursor miRNA
Sequence
145325
reads,
14528.0
reads per million, 3 experiments
uacuugaucggugucucgagcCGAGUUAAGGCUAAUAGUCCUUccgguguaugguaaUGACUAGAACCUUGACUCUGCUCgaguuacugagcucuuugaccccgccc
.......((((((.(((((((.(((((((((....(((((.(((((.....))).)).)))))...))))))))).))))))).)))))).................
.......((((((.(((((((.(((((((((....(((((.(((((.....))).)).)))))...))))))))).))))))).)))))).................
Structure
----------uacuuga u C CUAA C - g
ucggug cucgagc GAGUUAAGG UAGUC UU ccg u
|||||| ||||||| ||||||||| ||||| || ||| g
agucau gagCUCG CUCAGUUCC AUCAG aa ggu u
cccgccccaguuucucg u U -AAG U u a
Annotation confidence
High
Do you think this miRNA is real?
Comments
This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 4 positions.
Genome context
chrV: 9339579-9339685 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cbr-mir-61
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature cbr-miR-61-5p
| Accession | MIMAT0053557 |
| Description | Caenorhabditis briggsae cbr-miR-61-5p mature miRNA |
| Sequence | 22 - CGAGUUAAGGCUAAUAGUCCUU - 43 |
| Evidence | not_experimental |
Mature cbr-miR-61-3p
| Accession | MIMAT0001302 |
| Description | Caenorhabditis briggsae cbr-miR-61-3p mature miRNA |
| Sequence | 58 - UGACUAGAACCUUGACUCUGCUC - 80 |
| Evidence | not_experimental |
References
|
