Accession
MI0001406
Description
Caenorhabditis briggsae
cbr-mir-239a precursor miRNA
Sequence
gagaaugacgauccaaguuuaugcgauuUUUGUACUACAAUUAGGUACUGGacaccagcagcgaguguauccagaaucuauacuaguacaaaaauagcuaacaggauuaagau
.........(((((..(((...((.((((((((((((....(((((.(((((((((......).)))..))))).)))))...)))))))))))).)).))).))))).....
.........(((((..(((...((.((((((((((((....(((((.(((((((((......).)))..))))).)))))...)))))))))))).)).))).))))).....
Structure
gagaaugac aa uau g CAAU A -- - ag
gaucc guu gc auuUUUGUACUA UAGGU CUGGa cac c c
||||| ||| || |||||||||||| ||||| ||||| ||| |
uuagg caa cg uaaaaacaugau aucua gaccu gug g a
----uagaa -a --u a -cau a au a cg
Annotation confidence
Low
Do you think this miRNA is real?
Comments
This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 2 positions.
Genome context
chrX: 15212563-15212675 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cbr-mir-239a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature cbr-miR-239a
| Accession | MIMAT0001304 |
| Description | Caenorhabditis briggsae cbr-miR-239a mature miRNA |
| Sequence | 29 - UUUGUACUACAAUUAGGUACUGG - 51 |
| Evidence | not_experimental |
References
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