Stem-loop cbr-mir-55

Accession

MI0001412

Description

Caenorhabditis briggsae cbr-mir-55 precursor miRNA mir-55

Gene
family

RF00826; mir-55

Sequence

25948 reads, 2811.0 reads per million, 3 experiments

aaaauugaaucgucacaaagggggacuCGGCGGAAAAUAUGGUGGUAUAcuacacagugaauagauaUACCCGUAUAUUUUUCUGCCGAGccccuccacgacaucaauaagg
...(((((...(((.....(((((.((((((((((((((((..(((((((((.........))).))))))..)))).)))))))))))))))))....))).)))))....

Structure

-aaa     auc   acaaa     a            -    GU      -   cac 
    auuga   guc     ggggg cuCGGCGGAAAA UAUG  GGUAUA cua   a
    |||||   |||     ||||| |||||||||||| ||||  |||||| |||   g
    uaacu   cag     ucccc GAGCCGUCUUUU AUAU  CCAUau gau   u
ggaa     --a   -cacc     -            U    GC      a   aag 

Annotation confidence High

Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 3 positions.

Genome context

chrX: 16963456-16963567 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cbr-mir-55

Mature cbr-miR-55-5p

• Accession: MIMAT0053558
• Description: Caenorhabditis briggsae cbr-miR-55-5p mature miRNA
• Sequence: 28 - CGGCGGAAAAUAUGGUGGUAUA - 49
• Evidence: not_experimental

Mature cbr-miR-55-3p

• Accession: MIMAT0001310
• Description: Caenorhabditis briggsae cbr-miR-55-3p mature miRNA
• Sequence: 68 - UACCCGUAUAUUUUUCUGCCGAG - 90
• Evidence: not_experimental

References

1. PubMed ID: 12672692
   The microRNAs of Caenorhabditis elegans
   "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
   "Genes Dev (2003) 17:991-1008