Stem-loop cbr-mir-84

Accession

MI0001413

Description

Caenorhabditis briggsae cbr-mir-84 precursor miRNA

Literature search

3 open access papers mention cbr-mir-84
(13 sentences)

Sequence

414 reads, 60.0 reads per million, 3 experiments

uugcuauauauucagccguacugucugaaaauaacaucUGAGGUAGUUUGCAAUGCUGUCgacguaacugaaaagucaACAUCAUUCCAACUUCCUCGGCUGuucaaaaggcua
..(((........)))......((((......((((.((((((.((((.(.((((.(((.(((...........))).))).))))).)))).)))))).))))....))))..

Structure

uugcuauauauucagccguacu    gaaaau    u      U    U C    C   C   guaa 
                      gucu      aaca cUGAGG AGUU G AAUG UGU gac    c
                      ||||      |||| |||||| |||| | |||| ||| |||    u
                      cgga      uuGU GGCUCC UCAA C UUAC ACA cug    g
--------------------au    --aaac    C      U    C -    U   a   aaaa 

Annotation confidence High

Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 4 positions.

Genome context

chrX: 796067-796180 [-]

Mature cbr-miR-84-5p

• Accession: MIMAT0001311
• Description: Caenorhabditis briggsae cbr-miR-84-5p mature miRNA
• Sequence: 39 - UGAGGUAGUUUGCAAUGCUGUC - 60
• Evidence: not_experimental

Mature cbr-miR-84-3p

• Accession: MIMAT0053559
• Description: Caenorhabditis briggsae cbr-miR-84-3p mature miRNA
• Sequence: 79 - ACAUCAUUCCAACUUCCUCGGCUG - 102
• Evidence: not_experimental

References

1. PubMed ID: 12672692
   The microRNAs of Caenorhabditis elegans
   "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
   "Genes Dev (2003) 17:991-1008