miRBase entry: cbr-mir-354

Stem-loop cbr-mir-354

Accession

MI0001414

Description

Caenorhabditis briggsae cbr-mir-354 precursor miRNA

Sequence

ccagagccgacuaagugccuuggugcggcuacagacggguauccggcucgauguucauacaccgcgacucuuuccuuuuACCUUGUUUGUUGCUGCUCCUuuugguuuu
..((((((((...........((.(((((.(((((((((((...(((.((.(((....))).)).).......))...)))).))))))).))))).))..))))))))

Structure

cc        cuaagugccuu  u     u       -    ucc  ------- u  a   u 
  agagccga           gg gcggc acagacg ggua   gg       c cg ugu c
  ||||||||           || ||||| ||||||| ||||   ||       | || |||  
  uuuugguu           CC CGUCG UGUUUGU CCAu   cc       g gc aca a
--        ---------uU  U     U       U    uuu  uuucuca c  c   u

Annotation confidence Not enough data

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Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae.

Genome context

chrI: 15400915-15401023 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cbr-mir-354

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbr-miR-354

Accession	MIMAT0001312
Description	Caenorhabditis briggsae cbr-miR-354 mature miRNA
Sequence	80 - ACCUUGUUUGUUGCUGCUCCU - 100
Evidence	not_experimental

References

PubMed ID: 15317971
Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification
"Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB"
"RNA (2004) 10:1309-1322