Stem-loop cbr-mir-35a

Accession

MI0001415

Description

Caenorhabditis briggsae cbr-mir-35a precursor miRNA mir-35

Gene
family

RF02254; mir-35

Sequence

430825 reads, 35917.0 reads per million, 3 experiments

uaguccaguucuggacauuCGCGGGUUUUUUCCUUCGGUGAUAuucgaagaaucgcuaUCACCGGGUGAAAACUUGCAAGugucuugcuucgacuggucauuuugcuuguau
..(.(((((((.(((((((.((((((((((.((..((((((((..(((....))).)))))))))).)))))))))).))))))).)....)))))).).............

Structure

-----------ua u      ---- u       C          U  UU        uu   a 
             g ccaguu    c ggacauu GCGGGUUUUU CC  CGGUGAUA  cga g
             | ||||||    | ||||||| |||||||||| ||  ||||||||  |||  
             c ggucag    g ucuguGA CGUUCAAAAG GG  GCCACUau  gcu a
uauguucguuuua u      cuuc u       A          U  --        -c   a 

Annotation confidence High

Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 4 positions.

Genome context

chrII: 8378407-8378518 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from cbr-mir-35a

Mature cbr-miR-35a-5p

• Accession: MIMAT0053560
• Description: Caenorhabditis briggsae cbr-miR-35a-5p mature miRNA
• Sequence: 20 - CGCGGGUUUUUUCCUUCGGUGAUA - 43
• Evidence: not_experimental

Mature cbr-miR-35a-3p

• Accession: MIMAT0001313
• Description: Caenorhabditis briggsae cbr-miR-35a-3p mature miRNA
• Sequence: 59 - UCACCGGGUGAAAACUUGCAAG - 80
• Evidence: not_experimental

References

1. PubMed ID: 12672692
   The microRNAs of Caenorhabditis elegans
   "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
   "Genes Dev (2003) 17:991-1008