Stem-loop cbr-mir-35a

Accession

MI0001415

Description

Caenorhabditis briggsae cbr-mir-35a precursor miRNA mir-35

Gene
family

RF02254; mir-35

Sequence

uaguccaguucuggacauucgcggguuuuuuccuucggugauauucgaagaaucgcuaUCACCGGGUGAAAACUUGCAAGugucuugcuucgacuggucauuuugcuuguau
..(.(((((((.(((((((.((((((((((.((..((((((((..(((....))).)))))))))).)))))))))).))))))).)....)))))).).............

Structure

-----------ua u      ---- u       c          u  uu        uu   a 
             g ccaguu    c ggacauu gcggguuuuu cc  cggugaua  cga g
             | ||||||    | ||||||| |||||||||| ||  ||||||||  |||  
             c ggucag    g ucuguGA CGUUCAAAAG GG  GCCACUau  gcu a
uauguucguuuua u      cuuc u       A          U  --        -c   a 

Annotation confidence Low

Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 4 positions.

Genome context

chrII: 8378407-8378518 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from cbr-mir-35a

Mature cbr-miR-35a

• Accession: MIMAT0001313
• Description: Caenorhabditis briggsae cbr-miR-35a mature miRNA
• Sequence: 59 - UCACCGGGUGAAAACUUGCAAG - 80
• Evidence: not_experimental

References

1. PubMed ID: 12672692
   The microRNAs of Caenorhabditis elegans
   "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
   "Genes Dev (2003) 17:991-1008