Stem-loop cbr-mir-36

Accession

MI0001416

Description

Caenorhabditis briggsae cbr-mir-36 precursor miRNA

Literature search

4 open access papers mention cbr-mir-36
(7 sentences)

Sequence

2967029 reads, 240523.0 reads per million, 3 experiments

ugaaaccuucggaccauUGUGAAUUUUUGCUGCGGUGUUAcaacuaacaucuguaUCACCGGGUGAAAAUUCGCAAUgguccgauggguauuca
(((((((((((((((((((((((((((((((.(((((.((((.........)))).)))))))))))))))))))))))))))).)))).))))

Structure

    -    -                       G     U    acu 
ugaa accu ucggaccauUGUGAAUUUUUGCU CGGUG UAca   a
|||| |||| ||||||||||||||||||||||| ||||| ||||   a
acuu uggg agccuggUAACGCUUAAAAGUGG GCCAC augu   c
    a    u                       -     U    cua 

Annotation confidence High

Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 2 teminal 3' end positions.

Genome context

chrII: 8377557-8377650 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from cbr-mir-36

Mature cbr-miR-36-5p

• Accession: MIMAT0053561
• Description: Caenorhabditis briggsae cbr-miR-36-5p mature miRNA
• Sequence: 18 - UGUGAAUUUUUGCUGCGGUGUUA - 40
• Evidence: not_experimental

Mature cbr-miR-36-3p

• Accession: MIMAT0001314
• Description: Caenorhabditis briggsae cbr-miR-36-3p mature miRNA
• Sequence: 56 - UCACCGGGUGAAAAUUCGCAAU - 77
• Evidence: not_experimental

References

1. PubMed ID: 12672692
   The microRNAs of Caenorhabditis elegans
   "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
   "Genes Dev (2003) 17:991-1008