Accession
MI0001418
Description
Caenorhabditis briggsae
cbr-mir-38 precursor miRNA
Sequence
9658
reads,
886.0
reads per million, 3 experiments
gagccuggaccuguACCGGGUUCUCUUUGUGGUGAUAugacaacucauaaccauuccuuaUCACCGGGAGACAACCUGGUAUagguccagcgacuc
((((((((((((((((((((((.((((..((((((((.....................)))))))).)))).)))))))))))))))))).).)))
((((((((((((((((((((((.((((..((((((((.....................)))))))).)))).)))))))))))))))))).).)))
Structure
- - C UG ugacaacuc gag c cuggaccuguACCGGGUU UCUU UGGUGAUA a ||| | |||||||||||||||||| |||| |||||||| u cuc g gaccuggaUAUGGUCCAA AGAG GCCACUau a a c C -G uccuuacca
Annotation confidence
High
Do you think this miRNA is real?
Comments
This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 4 positions.
Genome context
chrII: 8377655-8377750 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from cbr-mir-38
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature cbr-miR-38-5p
| Accession | MIMAT0053562 |
| Description | Caenorhabditis briggsae cbr-miR-38-5p mature miRNA |
| Sequence | 15 - ACCGGGUUCUCUUUGUGGUGAUA - 37 |
| Evidence | not_experimental |
Mature cbr-miR-38-3p
| Accession | MIMAT0001315 |
| Description | Caenorhabditis briggsae cbr-miR-38-3p mature miRNA |
| Sequence | 61 - UCACCGGGAGACAACCUGGUAU - 82 |
| Evidence | not_experimental |
References
|
