Accession
MI0001419
Description
Caenorhabditis briggsae
cbr-mir-39 precursor miRNA
Sequence
2381
reads,
199.0
reads per million, 3 experiments
cagagaugcagggagcccAACUGGUUCUCACUGCAGUGAUAAGcuauguuacagucuaUCACCGGGUGAAAAACGGUUAGgcucuuuaagcaucucug
(((((((((((((((((.(((((..(.(((((...((((((.(((.......))).))))))..))))).)..))))).))))))))..)))))))))
(((((((((((((((((.(((((..(.(((((...((((((.(((.......))).))))))..))))).)..))))).))))))))..)))))))))
Structure
-- c GU C GCA A au
cagagaugc agggagcc AACUG U UCACU GUGAUA Gcu g
||||||||| |||||||| ||||| | ||||| |||||| ||| u
gucucuacg uuucucgG UUGGC A AGUGG CACUau uga u
aa A AA A -GC c ca
Annotation confidence
High
Do you think this miRNA is real?
Comments
This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 5 positions at the 3' end.
Genome context
chrII: 8377829-8377926 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from cbr-mir-39
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature cbr-miR-39-5p
| Accession | MIMAT0053563 |
| Description | Caenorhabditis briggsae cbr-miR-39-5p mature miRNA |
| Sequence | 19 - AACUGGUUCUCACUGCAGUGAUAAG - 43 |
| Evidence | not_experimental |
Mature cbr-miR-39-3p
| Accession | MIMAT0001316 |
| Description | Caenorhabditis briggsae cbr-miR-39-3p mature miRNA |
| Sequence | 59 - UCACCGGGUGAAAAACGGUUAG - 80 |
| Evidence | not_experimental |
References
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