Accession
MI0001420
Description
Caenorhabditis briggsae
cbr-mir-40 precursor miRNA
Sequence
58538
reads,
5058.0
reads per million, 3 experiments
ccccugcccucaccccAGCGGGUUUUCAUCGCAGUGAUAugacgcauucaaaccauuucuuaUCACCGGGUGUCAAUCAGCUAGggugugggcgcggg
(((.(((((.(((((.(((.((((..((((.(.((((((.((...............)).)))))).)))))..)))).))).))))).))))).)))
(((.(((((.(((((.(((.((((..((((.(.((((((.((...............)).)))))).)))))..)))).))).))))).))))).)))
Structure
c u c G UU G A u cgcauu ccc ugccc caccc AGC GGUU CAUC C GUGAUA ga c ||| ||||| ||||| ||| |||| |||| | |||||| || a ggg gcggg guggG UCG CUAA GUGG G CACUau cu a c u A A CU - C u uuacca
Annotation confidence
High
Do you think this miRNA is real?
Comments
This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 3 positions.
Genome context
chrII: 8377930-8378027 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from cbr-mir-40
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature cbr-miR-40-5p
| Accession | MIMAT0053564 |
| Description | Caenorhabditis briggsae cbr-miR-40-5p mature miRNA |
| Sequence | 17 - AGCGGGUUUUCAUCGCAGUGAUA - 39 |
| Evidence | not_experimental |
Mature cbr-miR-40-3p
| Accession | MIMAT0001317 |
| Description | Caenorhabditis briggsae cbr-miR-40-3p mature miRNA |
| Sequence | 63 - UCACCGGGUGUCAAUCAGCUAG - 84 |
| Evidence | not_experimental |
References
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