Accession
MI0001421
Description
Caenorhabditis briggsae
cbr-mir-41a precursor miRNA
Sequence
4512
reads,
408.0
reads per million, 3 experiments
ugaaagcaggucccaaaugccuuggUGGUUUUUCGCCGUAGUGAUAcaacaucgaagccauacgauaUCACCGGGUGAAAAACUCCCAaggucgggacauuuuuauuugu
((((((...(((((....(((((((.(((((((((((...((((((.....(((........)))))))))..))))))))))).))))))).))))).)))))).....
((((((...(((((....(((((((.(((((((((((...((((((.....(((........)))))))))..))))))))))).))))))).))))).)))))).....
Structure
----- cag aaau U GUA caaca aag
ugaaag guccc gccuugg GGUUUUUCGCC GUGAUA ucg c
|||||| ||||| ||||||| ||||||||||| |||||| |||
auuuuu caggg uggaACC UCAAAAAGUGG CACUau agc c
uguuu --a ---c C -GC ----- aua
Annotation confidence
Medium
Do you think this miRNA is real?
Comments
This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 3 positions.
Genome context
chrII: 8378281-8378390 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from cbr-mir-41a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature cbr-miR-41a-5p
| Accession | MIMAT0053565 |
| Description | Caenorhabditis briggsae cbr-miR-41a-5p mature miRNA |
| Sequence | 26 - UGGUUUUUCGCCGUAGUGAUA - 46 |
| Evidence | not_experimental |
Mature cbr-miR-41a-3p
| Accession | MIMAT0001318 |
| Description | Caenorhabditis briggsae cbr-miR-41a-3p mature miRNA |
| Sequence | 68 - UCACCGGGUGAAAAACUCCCA - 88 |
| Evidence | not_experimental |
References
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