Stem-loop xla-mir-427a-1

Accession

MI0001449

Description

Xenopus laevis xla-mir-427a-1 precursor miRNA

Literature search

5 open access papers mention xla-mir-427a-1
(29 sentences)

Sequence

264508 reads, 21242.0 reads per million, 13 experiments

agcACCCAAAACGGGGCUCUCUCUUGugacugaauuaugaugagAAAGUGCUUUCUGUUUUUGGcguu
.((.((.((((((((((.((.((((((.(........).)))))).)).)))..))))))).)).)).

Structure

a  A  C       --   U  C      g cug 
 gc CC AAAACGG  GGC CU UCUUGu a   a
 || || |||||||  ||| || |||||| |    
 ug GG UUUUGUC  UCG GA Agagua u   a
u  c  U       UU   U  A      g auu 

Annotation confidence Medium

Genome context

Sc000045_chrNA: 158-225 [+]

Mature xla-miR-427a-1-5p

• Accession: MIMAT0046595
• Description: Xenopus laevis xla-miR-427a-1-5p mature miRNA
• Sequence: 4 - ACCCAAAACGGGGCUCUCUCUUG - 26
• Evidence: experimental ; Illumina [1]

Mature xla-miR-427a-1-3p

• Accession: MIMAT0001344
• Description: Xenopus laevis xla-miR-427a-1-3p mature miRNA
• Sequence: 45 - AAAGUGCUUUCUGUUUUUGG - 64
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15642338
   Stage-specific expression of microRNAs during Xenopus development
   "Watanabe T, Takeda A, Mise K, Okuno T, Suzuki T, Minami N, Imai H"
   "FEBS Lett (2005) 579:318-324