Stem-loop xla-mir-428a

Accession

MI0001450

Description

Xenopus laevis xla-mir-428a precursor miRNA

Literature search

1 open access papers mention xla-mir-428a
(6 sentences)

Sequence

429495 reads, 13261.0 reads per million, 18 experiments

cacauUGGCCAAACUGGGGCGCUGUCUccuuguaucagugagUAAGUGCUCUCUAGUUCGGUUGcugugug
((((.(((((.((((((((((((..(((((......)).)))..))))).).)))))).))))).))))..

Structure

--    u     A      - -     GU   -  ug 
  caca UGGCC AACUGG G GCGCU  CUc cu  u
  |||| ||||| |||||| | |||||  ||| ||   
  gugu GUUGG UUGAUC C CGUGA  gag ga  a
gu    c     C      U U     AU   u  cu 

Annotation confidence High

Genome context

chr8L: 528888-528958 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xla-mir-428a

Mature xla-miR-428a-5p

• Accession: MIMAT0052062
• Description: Xenopus laevis xla-miR-428a-5p mature miRNA
• Sequence: 6 - UGGCCAAACUGGGGCGCUGUCU - 27
• Evidence: experimental ; cloned [1]

Mature xla-miR-428a-3p

• Accession: MIMAT0001345
• Description: Xenopus laevis xla-miR-428a-3p mature miRNA
• Sequence: 43 - UAAGUGCUCUCUAGUUCGGUUG - 64
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15642338
   Stage-specific expression of microRNAs during Xenopus development
   "Watanabe T, Takeda A, Mise K, Okuno T, Suzuki T, Minami N, Imai H"
   "FEBS Lett (2005) 579:318-324