Stem-loop xla-mir-18a-1

Accession

MI0001454

Description

Xenopus laevis xla-mir-18a-1 precursor miRNA

Literature search

2 open access papers mention xla-mir-18a-1
(4 sentences)

Sequence

3575 reads, 205.0 reads per million, 18 experiments

ccuuguguUAAGGUGCAUCUAGUGCAGUUagugacauagcguagcaucuACUGCCCUAAAUGCUCCUUUUGGCacaggg
(((((((((((((.((((.(((.(((((..(((.(........))))..))))).))).)))).)))..))))))))))

Structure

          --   U    C   U     Ua   a aua 
ccuuguguUA  AGG GCAU UAG GCAGU  gug c   g
||||||||||  ||| |||| ||| |||||  ||| |    
gggacaCGGU  UCC CGUA AUC CGUCA  uac g   c
          UU   U    A   C     uc   - aug 

Annotation confidence High

Genome context

chr8L: 48822216-48822294 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from xla-mir-18a-1

Mature xla-miR-18a-5p

• Accession: MIMAT0001349
• Description: Xenopus laevis xla-miR-18a-5p mature miRNA
• Sequence: 9 - UAAGGUGCAUCUAGUGCAGUU - 29
• Evidence: experimental ; cloned [1]

Mature xla-miR-18a-1-3p

• Accession: MIMAT0052064
• Description: Xenopus laevis xla-miR-18a-1-3p mature miRNA
• Sequence: 50 - ACUGCCCUAAAUGCUCCUUUUGGC - 73
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15642338
   Stage-specific expression of microRNAs during Xenopus development
   "Watanabe T, Takeda A, Mise K, Okuno T, Suzuki T, Minami N, Imai H"
   "FEBS Lett (2005) 579:318-324