Stem-loop sbi-MIR172b

Accession

MI0001501

Description

Sorghum bicolor sbi-MIR172b precursor miRNA

Literature search

4 open access papers mention sbi-MIR172b
(30 sentences)

Sequence

gcguggcaucaucaagauucacacacugcuugcaaaugcauacaugcaucucugccgccuucuuugccugccauuaauagcaguuuuacuacauguuuuagcugcugcugcaucauauaugccucugugaauauauauguguaugugugGGAAUCUUGAUGAUGCUGCAu
..((((((((((((((((((.(((((.((..(((((((((....)))))..............))))..))......((((((((..((.....))...)))))))).((((.((((((((..........)))))))))))).))))).))))))))))))))))))..

Structure

gc                  a     ugcuugcaaaugcauacaugcaucucugccgccuucuuugccugccauuaauagcaguuuuacuacauguuuuagcugcugc    u        ccuc 
  guggcaucaucaagauuc cacac                                                                                  ugca cauauaug    u
  |||||||||||||||||| |||||                                                                                  |||| ||||||||     
  CGUCGUAGUAGUUCUAAG gugug                                                                                  augu guauauau    g
uA                  G     ---------------------------------------------------------------------------------u    -        aagu 

Annotation confidence Not enough data

Genome context

chr3: 74188339-74188508 [-]

Mature sbi-miR172b

• Accession: MIMAT0001395
• Description: Sorghum bicolor sbi-miR172b mature miRNA
• Sequence: 150 - GGAAUCUUGAUGAUGCUGCA - 169
• Evidence: not_experimental

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 15660154
   Sorghum genome sequencing by methylation filtration
   Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
   PLoS Biol (2005) 3:e13