Stem-loop sbi-MIR172a

Accession

MI0001503

Description

Sorghum bicolor sbi-MIR172a precursor miRNA

Literature search

8 open access papers mention sbi-MIR172a
(37 sentences)

Sequence

234586 reads, 2683.0 reads per million, 49 experiments

guGCAGCAUCAUCAAGAUUCACAUccagcucauccucggugauaugcuauauacauaaauauaugcguaugugaugagaugAGAAUCUUGAUGAUGCUGCAu
((((((((((((((((((((.((((....(((((.......(((((((((((......))))).))))))..))))))))).))))))))))))))))))))

Structure

                    A    cagc     cucggug      -     ac 
guGCAGCAUCAUCAAGAUUC CAUc    ucauc       auaugc uauau  a
|||||||||||||||||||| ||||    |||||       |||||| |||||   
uACGUCGUAGUAGUUCUAAG guag    aguag       uaugcg auaua  u
                    A    ----     -----ug      u     aa 

Annotation confidence High

Genome context

chr9: 58774558-58774659 [-]

Mature sbi-miR172a-5p

• Accession: MIMAT0056337
• Description: Sorghum bicolor sbi-miR172a-5p mature miRNA
• Sequence: 3 - GCAGCAUCAUCAAGAUUCACAU - 24
• Evidence: experimental ; unknown

Mature sbi-miR172a-3p

• Accession: MIMAT0001397
• Description: Sorghum bicolor sbi-miR172a-3p mature miRNA
• Sequence: 82 - AGAAUCUUGAUGAUGCUGCA - 101
• Evidence: not_experimental

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 15660154
   Sorghum genome sequencing by methylation filtration
   Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
   PLoS Biol (2005) 3:e13