Stem-loop sbi-MIR164a

Accession

MI0001512

Description

Sorghum bicolor sbi-MIR164a precursor miRNA

Literature search

7 open access papers mention sbi-MIR164a
(15 sentences)

Sequence

733347 reads, 13866.0 reads per million, 50 experiments

UGGAGAAGCAGGGCACGUGCAuuaccauccaaugccgccaagcucgauccuccucugagcuugcuagcuccaucagcucgccagccauggcuggauggaugguucuUCAUGUGCCCAUCUUCUCCA
((((((((..(((((((((....((((((((.....((.((((((((......)).)))))))).((((.....))))..(((((....))))).))))))))....)))))))))..))))))))

Structure

        CA         CAuu        --------------------------augcc  c      -  uc 
UGGAGAAG  GGGCACGUG    accaucca                               gc aagcuc ga  c
||||||||  |||||||||    ||||||||                               || |||||| ||   
ACCUCUUC  CCCGUGUAC    ugguaggu                               cg uucgag cu  u
        UA         Uucu        aggucgguaccgaccgcucgacuaccucgau  -      u  cc 

Annotation confidence High

Genome context

chr9: 38911782-38911907 [-]

Mature sbi-miR164a-5p

• Accession: MIMAT0001406
• Description: Sorghum bicolor sbi-miR164a-5p mature miRNA
• Sequence: 1 - UGGAGAAGCAGGGCACGUGCA - 21
• Evidence: not_experimental

Mature sbi-miR164a-3p

• Accession: MIMAT0056346
• Description: Sorghum bicolor sbi-miR164a-3p mature miRNA
• Sequence: 107 - UCAUGUGCCCAUCUUCUCCA - 126
• Evidence: experimental ; unknown

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 15660154
   Sorghum genome sequencing by methylation filtration
   Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
   PLoS Biol (2005) 3:e13