Stem-loop sbi-MIR167b

Accession

MI0001514

Description

Sorghum bicolor sbi-MIR167b precursor miRNA

Literature search

3 open access papers mention sbi-MIR167b
(6 sentences)

Sequence

1207184 reads, 16201.0 reads per million, 50 experiments

UGAAGCUGCCAGCAUGAUCUAacaacggcauugcuccuccguguagcgcccugugcuugcuuuugcuugucuccauggagaagacagcggcaaagcuuagcuuugcuucgcuuagcuugcuggcuuuucguaugggcuggcggcggguugcugcgugaagcuugcaagugaugguuagAUCAUGCUGUGACAGUUUCA
(((((((((((((((((((((((....((.((((..((.(((((((((.((((((((.((............(((((((((((.(((((((.((((..(((...)))..)))).)).))))).)))))).))))))).))).))))).))))))))).))...))))))....)))))))))))))).).))))))))

Structure

        - -              aacg  a    -uc  c         c     -   u  uuuugcuugucu     -      a     -  a    uu   u 
UGAAGCUG C CAGCAUGAUCUAac    gc uugc   cu cguguagcg ccugu gcu gc            ccaug gagaag cagcg gc aagc  agc  
|||||||| | ||||||||||||||    || ||||   || ||||||||| ||||| ||| ||            ||||| |||||| ||||| || ||||  ||| u
ACUUUGAC G GUCGUACUAgauug    ug aacg   ga gugcgucgu gggcg cgg cg            gguau cuuuuc gucgu cg uucg  ucg  
        A U              guag  -    uuc  a         u     g   u  ------------     g      g     u  a    cu   u 

Annotation confidence High

Genome context

chr1: 7229987-7230184 [+]

Mature sbi-miR167b-5p

• Accession: MIMAT0001408
• Description: Sorghum bicolor sbi-miR167b-5p mature miRNA
• Sequence: 1 - UGAAGCUGCCAGCAUGAUCUA - 21
• Evidence: not_experimental

Mature sbi-miR167b-3p

• Accession: MIMAT0056348
• Description: Sorghum bicolor sbi-miR167b-3p mature miRNA
• Sequence: 179 - AUCAUGCUGUGACAGUUUCA - 198
• Evidence: experimental ; unknown

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 15660154
   Sorghum genome sequencing by methylation filtration
   Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
   PLoS Biol (2005) 3:e13