Stem-loop oar-mir-136

Accession

MI0001523

Description

Ovis aries oar-mir-136 precursor miRNA

Literature search

14 open access papers mention oar-mir-136
(20 sentences)

Sequence

249322 reads, 457.0 reads per million, 138 experiments

ucggaugagcccucggaggACUCCAUUUGUUUUGAUGAUGGAuucuuacgcucCAUCAUCGUCUCAAAUGAGUCUUcagaggguucuaucau
...(((((((((((.((((((((.(((((...((((((((((.........))))))))))...))))))))))))).)))))))).)))..

Structure

ucg   -        g        C     UUU          uuc 
   gau gagcccuc gaggACUC AUUUG   UGAUGAUGGA   u
   ||| |||||||| |||||||| |||||   ||||||||||   u
   cua cuugggag cUUCUGAG UAAAC   GCUACUACcu   a
-ua   u        a        -     UCU          cgc 

Annotation confidence High

Genome context

chr18: 64386976-64387067 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from oar-mir-136

Mature oar-miR-136-5p

• Accession: MIMAT0001417
• Description: Ovis aries oar-miR-136-5p mature miRNA
• Sequence: 20 - ACUCCAUUUGUUUUGAUGAUGGA - 42
• Evidence: experimental ; PCR [1]

Mature oar-miR-136-3p

• Accession: MIMAT0052512
• Description: Ovis aries oar-miR-136-3p mature miRNA
• Sequence: 54 - CAUCAUCGUCUCAAAUGAGUCUU - 76
• Evidence: experimental ; PCR [1]

References

1. PubMed ID: 15854907
   RNAi-mediated allelic trans-interaction at the imprinted Rtl1/Peg11 locus
   "Davis E, Caiment F, Tordoir X, Cavaille J, Ferguson-Smith A, Cockett N, Georges M, Charlier C"
   "Curr Biol (2005) 15:743-749