Stem-loop rno-mir-448

Accession

MI0001639

Description

Rattus norvegicus rno-mir-448 precursor miRNA

Literature search

3 open access papers mention rno-mir-448
(69 sentences)

Sequence

8576 reads, 55 reads per million, 110 experiments

acggggagguugAACAUCCUGCAUAGUGCUGCCAggaaaucccuacuucauacuaagagggggcuggcuggUUGCAUAUGUAGGAUGUCCCAucucccggcccacuucguca
.(.(((((((.(.((((((((((((.(((.(((((....(((((.(((......)))))))).....))))).))))))))))))))).).))))))).)............

Structure

-----------a g       u A            G   U     -gaaa     a   ca 
            c gggaggu g ACAUCCUGCAUA UGC GCCAg     ucccu cuu  u
            | ||||||| | |||||||||||| ||| |||||     ||||| |||   
            g cccucuA C UGUAGGAUGUAU ACG Ugguc     gggga gaa  a
acugcuucaccc g       C C            -   U     ggucg     -   uc 

Annotation confidence High

Comments

Xie et al. [1] refer to this sequence by the internal identifier MIR64. The sequence is unrelated to C. elegans mir-64 (MIR:MI0000035).

Genome context

chrX: 118277684-118277795 [+]

Mature rno-miR-448-5p

• Accession: MIMAT0017177
• Description: Rattus norvegicus rno-miR-448-5p mature miRNA
• Sequence: 13 - AACAUCCUGCAUAGUGCUGCCA - 34
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-448-3p

• Accession: MIMAT0001534
• Description: Rattus norvegicus rno-miR-448-3p mature miRNA
• Sequence: 72 - UUGCAUAUGUAGGAUGUCCCA - 92
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 15735639
   Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals
   "Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M"
   "Nature (2005) 434:338-345