Stem-loop cfa-mir-448

Accession

MI0001640

Description

Canis lupus familiaris cfa-mir-448 precursor miRNA

Literature search

1 open access papers mention cfa-mir-448
(2 sentences)

Sequence

8363 reads, 59.0 reads per million, 27 experiments

gcagggagguuGAACAUCCUGCAUAGUGCUGCCaggaaaucccuauuuuauacuaagggggcuggcuggUUGCAUAUGUAGGAUGUCCCAUcuccccgcccacuucaucg
((.(((((((.(.((((((((((((.(((.(((((....(((((...........))))).....))))).))))))))))))))).).))))))).))...........

Structure

-----------  a       u A            G   U     -gaaa     auuu 
           gc gggaggu G ACAUCCUGCAUA UGC GCCag     ucccu    u
           || ||||||| | |||||||||||| ||| |||||     |||||    a
           cg cccucUA C UGUAGGAUGUAU ACG Ugguc     gggga    u
gcuacuucacc  c       C C            -   U     ggucg     auca 

Annotation confidence High

Comments

Xie et al. [1] refer to this sequence by the internal identifier MIR64. The sequence is unrelated to C. elegans mir-64 (MIR:MI0000035).

Genome context

X: 89270890-89270999 [+]

Mature cfa-miR-448-5p

• Accession: MIMAT0051694
• Description: Canis lupus familiaris cfa-miR-448-5p mature miRNA
• Sequence: 12 - GAACAUCCUGCAUAGUGCUGCC - 33
• Evidence: experimental ; cloned [1]

Mature cfa-miR-448-3p

• Accession: MIMAT0001535
• Description: Canis lupus familiaris cfa-miR-448-3p mature miRNA
• Sequence: 70 - UUGCAUAUGUAGGAUGUCCCAU - 91
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15735639
   Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals
   "Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M"
   "Nature (2005) 434:338-345