Stem-loop cfa-mir-365-2

Accession

MI0001647

Description

Canis lupus familiaris cfa-mir-365-2 precursor miRNA

Sequence

55095 reads, 152.0 reads per million, 82 experiments

agaguguucaaggacagcaagaaaaaugAGGGACUUUCAGGGGCAGCUGUGuuuucugacucagucaUAAUGCCCCUAAAAAUCCUUAUuguucuugcagugugcaucggg
...........(.((((((((((.((((((((..(((.(((((((((((.(((....))).)))).....))))))).))).)))))))).)))))))..))).)......

Structure

agaguguucaa g   --       a        AC   C       -----    U   u 
           g aca  gcaagaa aaugAGGG  UUU AGGGGCA     GCUG Guu u
           | |||  ||||||| ||||||||  ||| |||||||     |||| |||  
           c ugu  cguucuu uUAUUCCU  AAA UCCCCGU     ugac cag c
-----gggcua g   ga       g        -A   A       AAUac    u   u 

Annotation confidence High

Comments

Xie et al. [1] refer to this sequence by the internal identifier MIR190. The sequence is unrelated to mammalian mir-190 (MIR:MI0000486).

Genome context

9: 42123714-42123824 [-]

Mature cfa-miR-365-2-5p

• Accession: MIMAT0051695
• Description: Canis lupus familiaris cfa-miR-365-2-5p mature miRNA
• Sequence: 29 - AGGGACUUUCAGGGGCAGCUGUG - 51
• Evidence: experimental ; cloned [1]

Mature cfa-miR-365-3p

• Accession: MIMAT0001540
• Description: Canis lupus familiaris cfa-miR-365-3p mature miRNA
• Sequence: 68 - UAAUGCCCCUAAAAAUCCUUAU - 89
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15735639
   Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals
   "Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M"
   "Nature (2005) 434:338-345