Stem-loop cfa-mir-449a

Accession

MI0001651

Description

Canis lupus familiaris cfa-mir-449a precursor miRNA

Literature search

4 open access papers mention cfa-mir-449a
(6 sentences)

Sequence

26976 reads, 269.0 reads per million, 70 experiments

ccgugugugauggguUGGCAGUGUAUUGUUAGCUGGUUGaauauaugaauggcauCAGCUAACAUGCAACUGCUAUCUuauugcauauaca
..((((((((((((.(((((((((((.((((((((((...((......))...)))))))))))))).))))))).))))))))))))...

Structure

-cc            u       -    U          UGa  au 
   gugugugauggg UGGCAGU GUAU GUUAGCUGGU   au  a
   |||||||||||| ||||||| |||| ||||||||||   ||   
   uauacguuauUC AUCGUCA CGUA CAAUCGACua   ua  u
aca            U       A    -          cgg  ag 

Annotation confidence High

Comments

Xie et al. [1] refer to this sequence by the internal identifier MIR54. The sequence is unrelated to C. elegans mir-54 (MIR:MI0000025).

Genome context

2: 43003982-43004072 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-449a

Mature cfa-miR-449a-5p

• Accession: MIMAT0001544
• Description: Canis lupus familiaris cfa-miR-449a-5p mature miRNA
• Sequence: 16 - UGGCAGUGUAUUGUUAGCUGGUUG - 39
• Evidence: experimental ; cloned [1]

Mature cfa-miR-449a-3p

• Accession: MIMAT0051697
• Description: Canis lupus familiaris cfa-miR-449a-3p mature miRNA
• Sequence: 56 - CAGCUAACAUGCAACUGCUAUCU - 78
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15735639
   Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals
   "Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M"
   "Nature (2005) 434:338-345