miRBase entry: cfa-mir-449a

Stem-loop cfa-mir-449a

Accession

MI0001651

Description

Canis familiaris cfa-mir-449a precursor miRNA

Sequence

ccgugugugauggguUGGCAGUGUAUUGUUAGCUGGUugaauauaugaauggcaucagcuaacaugcaacugcuaucuuauugcauauaca
..((((((((((((.(((((((((((.((((((((((...((......))...)))))))))))))).))))))).))))))))))))...

Structure

-cc            u       -    U          uga  au 
   gugugugauggg UGGCAGU GUAU GUUAGCUGGU   au  a
   |||||||||||| ||||||| |||| ||||||||||   ||   
   uauacguuauuc aucguca cgua caaucgacua   ua  u
aca            u       a    -          cgg  ag

Annotation confidence Not enough data

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Comments

Xie et al. [1] refer to this sequence by the internal identifier MIR54. The sequence is unrelated to C. elegans mir-54 (MIR:MI0000025).

Genome context

chr2: 42541949-42542039 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-449a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-449a

Accession	MIMAT0001544
Description	Canis familiaris cfa-miR-449a mature miRNA
Sequence	16 - UGGCAGUGUAUUGUUAGCUGGU - 37
Evidence	experimental cloned [1]

References

PubMed ID: 15735639
Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals
"Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M"
"Nature (2005) 434:338-345