Stem-loop rno-mir-450a

Accession

MI0001654

Description

Rattus norvegicus rno-mir-450a precursor miRNA

Literature search

10 open access papers mention rno-mir-450a
(28 sentences)

Sequence

642289 reads, 622.0 reads per million, 504 experiments

gagagaugcggagcuguUUUUGCGAUGUGUUCCUAAUGUGugcuacaauuauAUUGGGAACAUUUUGCAUAAAUaguuuuacaucgacaca
....((((.((((((((((.(((((.((((((((((((((.........)))))))))))))).))))).)))))))))).))))......

Structure

--gaga    c          U     U              ugc 
      gaug ggagcuguUU UGCGA GUGUUCCUAAUGUG   u
      |||| |||||||||| ||||| ||||||||||||||   a
      cuac uuuugaUAAA ACGUU UACAAGGGUUAuau   c
acacag    a          U     U              uaa 

Annotation confidence High

Comments

Xie et al. [1] refer to this sequence by the internal identifier MIR238. The sequence is unrelated to C. elegans mir-238 (MIR:MI0000313).

Genome context

chrX: 158153377-158153467 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from rno-mir-450a

Mature rno-miR-450a-5p

• Accession: MIMAT0001547
• Description: Rattus norvegicus rno-miR-450a-5p mature miRNA
• Sequence: 18 - UUUUGCGAUGUGUUCCUAAUGUG - 40
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-450a-3p

• Accession: MIMAT0017183
• Description: Rattus norvegicus rno-miR-450a-3p mature miRNA
• Sequence: 53 - AUUGGGAACAUUUUGCAUAAAU - 74
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 15735639
   Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals
   "Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M"
   "Nature (2005) 434:338-345