Stem-loop cfa-mir-450a

Accession

MI0001655

Description

Canis familiaris cfa-mir-450a precursor miRNA

Sequence

gaaagaugcugaacugUUUUUGCGAUGUGUUCCUAAUAugcaguaugaacauauugggagcauuuugcaugcaugguuuuguaucaauaua
....(((((.(((((((...(((((.((((((((((((((.........)))))))))))))).)))))...))))))).)))))......

Structure

--gaaa     u       UUU     U              cag 
      gaugc gaacugU   UGCGA GUGUUCCUAAUAug   u
      ||||| |||||||   ||||| ||||||||||||||   a
      cuaug uuuggua   acguu uacgaggguuauac   u
auauaa     u       cgu     u              aag 

Annotation confidence Not enough data

Comments

Xie et al. [1] refer to this sequence by the internal identifier MIR238. The sequence is unrelated to C. elegans mir-238 (MIR:MI0000313).

Genome context

chrX: 105177439-105177529 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from cfa-mir-450a

Mature cfa-miR-450a

• Accession: MIMAT0001548
• Description: Canis familiaris cfa-miR-450a mature miRNA
• Sequence: 17 - UUUUUGCGAUGUGUUCCUAAUA - 38
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15735639
   Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals
   "Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M"
   "Nature (2005) 434:338-345