Stem-loop cfa-mir-450a

Accession

MI0001655

Description

Canis lupus familiaris cfa-mir-450a precursor miRNA

Literature search

2 open access papers mention cfa-mir-450a
(2 sentences)

Sequence

121658 reads, 538.0 reads per million, 82 experiments

gaaagaugcugaacuguUUUUGCGAUGUGUUCCUAAUAUgcaguaugaacauAUUGGGAGCAUUUUGCAUGCAUgguuuuguaucaauaua
....(((((.(((((((...(((((.((((((((((((((.........)))))))))))))).)))))...))))))).)))))......

Structure

--gaaa     u       UUU     U              cag 
      gaugc gaacugu   UGCGA GUGUUCCUAAUAUg   u
      ||||| |||||||   ||||| ||||||||||||||   a
      cuaug uuuggUA   ACGUU UACGAGGGUUAuac   u
auauaa     u       CGU     U              aag 

Annotation confidence High

Comments

Xie et al. [1] refer to this sequence by the internal identifier MIR238. The sequence is unrelated to C. elegans mir-238 (MIR:MI0000313).

Genome context

X: 107037191-107037281 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cfa-mir-450a

Mature cfa-miR-450a-5p

• Accession: MIMAT0001548
• Description: Canis lupus familiaris cfa-miR-450a-5p mature miRNA
• Sequence: 18 - UUUUGCGAUGUGUUCCUAAUAU - 39
• Evidence: experimental ; cloned [1]

Mature cfa-miR-450a-3p

• Accession: MIMAT0051698
• Description: Canis lupus familiaris cfa-miR-450a-3p mature miRNA
• Sequence: 53 - AUUGGGAGCAUUUUGCAUGCAU - 74
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15735639
   Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals
   "Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M"
   "Nature (2005) 434:338-345