Stem-loop cfa-mir-365-1

Accession

MI0001657

Description

Canis lupus familiaris cfa-mir-365-1 precursor miRNA

Sequence

56144 reads, 152.0 reads per million, 82 experiments

accgcagggaaaaugAGGGACUUUUGGGGGCAGAUGUGuuuccauuccacuaucaUAAUGCCCCUAAAAAUCCUUAUugcucuugca
...((((((..((((((((..(((((((((((((((((.........))).)))....))))))))))).))))))))..)))))).

Structure

acc      aa        AC           ----   -   uuu 
   gcaggg  aaugAGGG  UUUUGGGGGCA    GAU GUG   c
   ||||||  ||||||||  |||||||||||    ||| |||   c
   cguucu  uUAUUCCU  AAAAUCCCCGU    cua cac   a
--a      cg        -A           AAUa   u   cuu 

Annotation confidence High

Comments

Xie et al. [1] refer to this sequence by the internal identifier MIR245. The sequence is unrelated to C. elegans mir-245 (MIR:MI0000321).

Genome context

6: 29036352-29036438 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-365-1

Mature cfa-miR-365-1-5p

• Accession: MIMAT0051696
• Description: Canis lupus familiaris cfa-miR-365-1-5p mature miRNA
• Sequence: 16 - AGGGACUUUUGGGGGCAGAUGUG - 38
• Evidence: experimental ; cloned [1]

Mature cfa-miR-365-3p

• Accession: MIMAT0001540
• Description: Canis lupus familiaris cfa-miR-365-3p mature miRNA
• Sequence: 56 - UAAUGCCCCUAAAAAUCCUUAU - 77
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15735639
   Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals
   "Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M"
   "Nature (2005) 434:338-345