Stem-loop osa-MIR439c

Accession

MI0001693

Description

Oryza sativa osa-MIR439c precursor miRNA

Literature search

2 open access papers mention osa-MIR439c
(2 sentences)

Sequence

129796 reads, 590.0 reads per million, 142 experiments

uacccugucgaacugacgcaguucgacAUGUACCUGUCGAACUGUGGUUguucgauagguaucccUGUCGAACCGCGGUUGUUCGAcagggug
(((((((((((((...(((.((((((((.(((((((((((((.......)))))))))))))...)))))))).)))...)))))))))))))

Structure

             uga   a        --U             UG 
uacccugucgaac   cgc guucgacA   GUACCUGUCGAAC  U
|||||||||||||   ||| ||||||||   |||||||||||||  G
gugggacAGCUUG   GCG CAAGCUGU   uauggauagcuug  G
             UUG   C        ccc             UU 

Annotation confidence Low

Genome context

9: 16963027-16963119 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from osa-MIR439c

Mature osa-miR439c-5p

• Accession: MIMAT0055985
• Description: Oryza sativa osa-miR439c-5p mature miRNA
• Sequence: 28 - AUGUACCUGUCGAACUGUGGUU - 49
• Evidence: experimental ; unknown

Mature osa-miR439c-3p

• Accession: MIMAT0001591
• Description: Oryza sativa osa-miR439c-3p mature miRNA
• Sequence: 66 - UGUCGAACCGCGGUUGUUCGA - 86
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15805478
   Cloning and characterization of microRNAs from rice
   "Sunkar R, Girke T, Jain PK, Zhu JK"
   "Plant Cell (2005) 17:1397-1411