Stem-loop osa-MIR439e

Accession

MI0001695

Description

Oryza sativa osa-MIR439e precursor miRNA

Literature search

2 open access papers mention osa-MIR439e
(2 sentences)

Sequence

132010 reads, 597.0 reads per million, 142 experiments

ccaccuacccugucgaacugacgcaguucgacAUGUACCUGUCGAACUGUGGUUguucgauagguaucccUGUCGAACCGCGGUUGUUCGAcagggug
.....(((((((((((((...(((.((((((((.(((((((((((((.......)))))))))))))...)))))))).)))...)))))))))))))

Structure

ccacc             uga   a        --U             UG 
     uacccugucgaac   cgc guucgacA   GUACCUGUCGAAC  U
     |||||||||||||   ||| ||||||||   |||||||||||||  G
     gugggacAGCUUG   GCG CAAGCUGU   uauggauagcuug  G
-----             UUG   C        ccc             UU 

Annotation confidence Low

Genome context

9: 16963022-16963119 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from osa-MIR439e

Mature osa-miR439e-5p

• Accession: MIMAT0055987
• Description: Oryza sativa osa-miR439e-5p mature miRNA
• Sequence: 33 - AUGUACCUGUCGAACUGUGGUU - 54
• Evidence: experimental ; unknown

Mature osa-miR439e-3p

• Accession: MIMAT0001593
• Description: Oryza sativa osa-miR439e-3p mature miRNA
• Sequence: 71 - UGUCGAACCGCGGUUGUUCGA - 91
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15805478
   Cloning and characterization of microRNAs from rice
   "Sunkar R, Girke T, Jain PK, Zhu JK"
   "Plant Cell (2005) 17:1397-1411