Stem-loop osa-MIR439f

Accession

MI0001696

Description

Oryza sativa osa-MIR439f precursor miRNA

Literature search

2 open access papers mention osa-MIR439f
(2 sentences)

Sequence

131296 reads, 596.0 reads per million, 142 experiments

accuacccugucgaacugacgcaguucgacAUGUACCUGUCGAACUGUGGUUguucgauagguaucccUGUCGAACCGCGGUUGUUCGAcagggug
...(((((((((((((...(((.((((((((.(((((((((((((.......)))))))))))))...)))))))).)))...)))))))))))))

Structure

acc             uga   a        --U             UG 
   uacccugucgaac   cgc guucgacA   GUACCUGUCGAAC  U
   |||||||||||||   ||| ||||||||   |||||||||||||  G
   gugggacAGCUUG   GCG CAAGCUGU   uauggauagcuug  G
---             UUG   C        ccc             UU 

Annotation confidence Low

Genome context

9: 16963024-16963119 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from osa-MIR439f

Mature osa-miR439f-5p

• Accession: MIMAT0055988
• Description: Oryza sativa osa-miR439f-5p mature miRNA
• Sequence: 31 - AUGUACCUGUCGAACUGUGGUU - 52
• Evidence: experimental ; unknown

Mature osa-miR439f-3p

• Accession: MIMAT0001594
• Description: Oryza sativa osa-miR439f-3p mature miRNA
• Sequence: 69 - UGUCGAACCGCGGUUGUUCGA - 89
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15805478
   Cloning and characterization of microRNAs from rice
   "Sunkar R, Girke T, Jain PK, Zhu JK"
   "Plant Cell (2005) 17:1397-1411