Stem-loop osa-MIR439h

Accession

MI0001698

Description

Oryza sativa osa-MIR439h precursor miRNA

Literature search

2 open access papers mention osa-MIR439h
(2 sentences)

Sequence

126667 reads, 579.0 reads per million, 142 experiments

accaccuacccugucgaacucacgcaguucgacAUGUACCUGUCGAACUGUGGUUguucgauagguaucccUGUCGAACCGCGGUUGUUCGAcagggug
......(((((((((((((...(((.((((((((.(((((((((((((.......)))))))))))))...)))))))).)))...)))))))))))))

Structure

accacc             uca   a        --U             UG 
      uacccugucgaac   cgc guucgacA   GUACCUGUCGAAC  U
      |||||||||||||   ||| ||||||||   |||||||||||||  G
      gugggacAGCUUG   GCG CAAGCUGU   uauggauagcuug  G
------             UUG   C        ccc             UU 

Annotation confidence Low

Genome context

6: 1553119-1553217 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR439h

Mature osa-miR439h-5p

• Accession: MIMAT0055990
• Description: Oryza sativa osa-miR439h-5p mature miRNA
• Sequence: 34 - AUGUACCUGUCGAACUGUGGUU - 55
• Evidence: experimental ; unknown

Mature osa-miR439h-3p

• Accession: MIMAT0001596
• Description: Oryza sativa osa-miR439h-3p mature miRNA
• Sequence: 72 - UGUCGAACCGCGGUUGUUCGA - 92
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15805478
   Cloning and characterization of microRNAs from rice
   "Sunkar R, Girke T, Jain PK, Zhu JK"
   "Plant Cell (2005) 17:1397-1411