Stem-loop dre-mir-451

Accession

MI0001732

Description

Danio rerio dre-mir-451 precursor miRNA mir-451

Gene
family

RF00722; mir-451

Literature search

31 open access papers mention dre-mir-451
(145 sentences)

Sequence

4927919 reads, 24094.0 reads per million, 280 experiments

agaggcggcgAAACCGUUACCAUUACUGAGUUuAGUAAUGGUAAGGGUUCUGcugccuuu
.(((((((((.((((.((((((((((((....)))))))))))).)))).))))))))).

Structure

a         A    G            A 
 gaggcggcg AACC UUACCAUUACUG G
 ||||||||| |||| ||||||||||||  
 uuccgucGU UUGG AAUGGUAAUGAu U
u         C    G            U 

Annotation confidence High

Genome context

chr5: 42271971-42272030 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-451

Mature dre-miR-451-5p

• Accession: MIMAT0001634
• Description: Danio rerio dre-miR-451-5p mature miRNA
• Sequence: 11 - AAACCGUUACCAUUACUGAGUU - 32
• Evidence: experimental ; cloned [2]

Mature dre-miR-451-3p

• Accession: MIMAT0061462
• Description: Danio rerio dre-miR-451-3p mature miRNA
• Sequence: 34 - AGUAAUGGUAAGGGUUCUG - 52
• Evidence: experimental ; cloned [2]

References

1. PubMed ID: 15891114
   Clustering and conservation patterns of human microRNAs
   "Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A, Brownstein MJ, Tuschl T, Margalit H"
   "Nucleic Acids Res (2005) 33:2697-2706


2. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293