miRBase entry: dre-mir-15a-2

Stem-loop dre-mir-15a-2

Accession

MI0001892

Description

Danio rerio dre-mir-15a-2 precursor miRNA

Gene family

MIPF0000006; mir-15

Literature search

11 open access papers mention dre-mir-15a-2
(25 sentences)

Sequence

1183 reads, 178 reads per million, 11 experiments

gccgaggcucucuaggugauggugUAGCAGCACAGAAUGGUUUGUGgugauacagagaugcaggccaugaugugcugcagcaucaauuccugggaccuacgc
..(((((.((.(((((...((((((.((((((((..((((((((((............))))))))))..)))))))).))))))...)))))))))).)).

Structure

gc  -   c  u     uga      A        GA          gugau 
  cg agg uc cuagg   uggugU GCAGCACA  AUGGUUUGUG     a
  || ||| || |||||   |||||| ||||||||  ||||||||||      
  gc ucc ag ggucc   acuacg cgucgugu  uaccggacgu     c
-c  a   -  -     uua      a        ag          agaga

Annotation confidence Not enough data

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Genome context

chr9: 29652511-29652612 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-15a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-15a-5p

Accession	MIMAT0001772
Description	Danio rerio dre-miR-15a-5p mature miRNA
Sequence	25 - UAGCAGCACAGAAUGGUUUGUG - 46
Evidence	experimental cloned [1]
Database links
Predicted targets

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293