miRBase entry: dre-mir-15b

Stem-loop dre-mir-15b

Accession

MI0001893

Description

Danio rerio dre-mir-15b precursor miRNA mir-15

Gene
family?

RF00455; mir-15

Literature search

6 open access papers mention dre-mir-15b
(16 sentences)

Sequence

9169 reads, 811 reads per million, 11 experiments

gucugucgucaucuuuuuauuuagcccugagugcccugUAGCAGCACAUCAUGGUUUGUAaguuauaagggcaaauucCGAAUCAUGAUGUGCUGUCACUgggagccugggaguuucuccauuaacaugacagc
..(((((((...............(((.(.((.(((.((.((((((((((((((((((.((..............)).)))))))))))))))))).)).))).))).)))...............))))))).

Structure

gu       caucuuuuuauuuag   u a  g   u  A                  U  guuaua 
  cugucgu               ccc g gu ccc gU GCAGCACAUCAUGGUUUG Aa      a
  |||||||               ||| | || ||| || |||||||||||||||||| ||       
  gacagua               ggg c cg ggg CA UGUCGUGUAGUACUAAGC uu      g
-c       caauuaccucuuuga   u -  a   U  C                  c  aaacgg

Annotation confidence High

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Genome context

chr7: 26070874-26071007 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-15b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-15b-5p

Accession	MIMAT0001773
Description	Danio rerio dre-miR-15b-5p mature miRNA
Sequence	39 - UAGCAGCACAUCAUGGUUUGUA - 60
Evidence	experimental cloned [1]
Database links
Predicted targets

Mature dre-miR-15b-3p

Accession	MIMAT0031936
Description	Danio rerio dre-miR-15b-3p mature miRNA
Sequence	79 - CGAAUCAUGAUGUGCUGUCACU - 100
Evidence	not_experimental
Database links

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293