Stem-loop dre-mir-16b

Accession

MI0001895

Description

Danio rerio dre-mir-16b precursor miRNA mir-15

Gene
family

RF00455; mir-15

Literature search

11 open access papers mention dre-mir-16b
(27 sentences)

Sequence

1976561 reads, 2212.0 reads per million, 302 experiments

ccugaacuuggccgugugacagacuggcugccuggcugUAGCAGCACGUAAAUAUUGGAGucaaagcacuugcgaauccuCCAGUAUUGACCGUGCUGCUGGAguuaggcgggccguuuaccgucugcgggggccucggg
(((((....((((.(.((.((((((((((((((((((.((((((((((..((((((((((.....((....)).....))))))))))...)))))))))).)))))))).)))))......))))))).))))))))))

Structure

     acuu    g g  a     ------     -        g          -UA          ucaaa  a 
ccuga    ggcc u ug cagac      uggcu gccuggcu UAGCAGCACG   AAUAUUGGAG     gc c
|||||    |||| | || |||||      ||||| |||||||| ||||||||||   ||||||||||     ||  
gggcu    ccgg g gc gucug      gccgg cggauugA GUCGUCGUGC   UUAUGACCuc     cg u
     ----    - g  -     ccauuu     g        G          CAG          cuaag  u 

Annotation confidence High

Genome context

chr1: 46722379-46722518 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-16b

Mature dre-miR-16b-5p

• Accession: MIMAT0001775
• Description: Danio rerio dre-miR-16b-5p mature miRNA
• Sequence: 39 - UAGCAGCACGUAAAUAUUGGAG - 60
• Evidence: experimental ; cloned [1]

Mature dre-miR-16b-3p

• Accession: MIMAT0060866
• Description: Danio rerio dre-miR-16b-3p mature miRNA
• Sequence: 81 - CCAGUAUUGACCGUGCUGCUGGA - 103
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293