Stem-loop dre-mir-22a

Accession

MI0001910

Description

Danio rerio dre-mir-22a precursor miRNA mir-22

Gene
family

RF00653; mir-22

Literature search

8 open access papers mention dre-mir-22a
(19 sentences)

Sequence

22979695 reads, 23623.0 reads per million, 296 experiments

gcugaccugcagcAGUUCUUCACUGGCAAGCUUUAUguccuuguguaccagcuaaAGCUGCCAGCUGAAGAACUGUUgugguuggc
(((((((.((((((((((((((((((((.((((((.((............)))))))))))))).)))))))))))))))))))))

Structure

       u              -      A      U  ccuug 
gcugacc gcagcAGUUCUUCA CUGGCA GCUUUA gu     u
||||||| |||||||||||||| |||||| |||||| ||      
cgguugg ugUUGUCAAGAAGU GACCGU CGAaau cg     g
       -              C      -      -  accau 

Annotation confidence High

Genome context

chr15: 24908394-24908479 [-]

Mature dre-miR-22a-5p

• Accession: MIMAT0031942
• Description: Danio rerio dre-miR-22a-5p mature miRNA
• Sequence: 14 - AGUUCUUCACUGGCAAGCUUUAU - 36
• Evidence: not_experimental

Mature dre-miR-22a-3p

• Accession: MIMAT0001788
• Description: Danio rerio dre-miR-22a-3p mature miRNA
• Sequence: 56 - AGCUGCCAGCUGAAGAACUGUU - 77
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293