Stem-loop dre-mir-22b-1

Accession

MI0001912

Description

Danio rerio dre-mir-22b-1 precursor miRNA mir-22

Gene
family

RF00653; mir-22

Literature search

5 open access papers mention dre-mir-22b-1
(7 sentences)

Sequence

558418 reads, 578.0 reads per million, 279 experiments

guuacuucacaguCGUUCUUCACUGGCUAGCUUUauguggcagcaccuuaAAGCUGCCAGUUGAAGAGCUGUUguggguaac
((((((.(((((..(((((((((((((.(((((((.(((....)))..)))))))))))).))))))))..)))))))))))

Structure

      u     uC        -     U       -u   g 
guuacu cacag  GUUCUUCA CUGGC AGCUUUa  gug c
|||||| |||||  |||||||| ||||| |||||||  |||  
caaugg gugUU  CGAGAAGU GACCG UCGAAau  cac a
      -     GU        U     -       uc   g 

Annotation confidence High

Genome context

chr5: 12610802-12610883 [+]

Mature dre-miR-22b-1-5p

• Accession: MIMAT0031943
• Description: Danio rerio dre-miR-22b-1-5p mature miRNA
• Sequence: 14 - CGUUCUUCACUGGCUAGCUUU - 34
• Evidence: not_experimental

Mature dre-miR-22b-1-3p

• Accession: MIMAT0001789
• Description: Danio rerio dre-miR-22b-1-3p mature miRNA
• Sequence: 51 - AAGCUGCCAGUUGAAGAGCUGUU - 73
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293