Stem-loop dre-mir-23b-1

Accession

MI0001917

Description

Danio rerio dre-mir-23b-1 precursor miRNA

Literature search

42 open access papers mention dre-mir-23b-1
(118 sentences)

Sequence

883656 reads, 1144.0 reads per million, 280 experiments

guggcugugUGGGUUCUUGGCAUGCUGAUUUgugacuguaguaaaaaaaaAUCACAUUGCCAGGGAUUACCACacuaccac
((((..((((((((((((((((((.((((((.................)))))))).))))))))))..))))))..))))

Structure

    cu      --          -  C      gugacug 
gugg  gugUGG  GUUCUUGGCA UG UGAUUU       u
||||  ||||||  |||||||||| || ||||||       a
cacc  caCACC  UAGGGACCGU AC ACUAaa       g
    au      AU          U  -      aaaaaau 

Annotation confidence High

Genome context

chr10: 15954579-15954659 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-23b-1

Mature dre-miR-23b-5p

• Accession: MIMAT0048660
• Description: Danio rerio dre-miR-23b-5p mature miRNA
• Sequence: 10 - UGGGUUCUUGGCAUGCUGAUUU - 31
• Evidence: not_experimental

Mature dre-miR-23b-3p

• Accession: MIMAT0048661
• Description: Danio rerio dre-miR-23b-3p mature miRNA
• Sequence: 51 - AUCACAUUGCCAGGGAUUACCAC - 73
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293