miRBase entry: dre-mir-24-3

Stem-loop dre-mir-24-3

Accession

MI0001920

Description

Danio rerio dre-mir-24-3 precursor miRNA mir-24

Gene
family?

RF00178; mir-24

Literature search

5 open access papers mention dre-mir-24-3
(81 sentences)

Sequence

12604 reads, 642 reads per million, 11 experiments

gcugaacgggagucauaugagagauagauggagcuggccucccgugccuacugagcugauuacaguacugugcaaacacUGGCUCAGUUCAGCAGGAACAGgagucugguccacaaacuccaccaaacacugcugcuucagc
(((((((((.(((....((.(((...(.((((.((((.((((.((.(((.(((((((((...((((...((....))))))..))))))))).))).)).)))).)))))))))...)))))......))).))).))))))

Structure

      -   g   --caua  a   aua a    g    c    c  g   a         uua    acu  g 
gcugaa cgg agu      ug gag   g ugga cugg cucc gu ccu cugagcuga   cagu   gu c
|||||| ||| |||      || |||   | |||| |||| |||| || ||| |||||||||   ||||   ||  
cgacuu guc uca      ac cuc   c accu gguc gagG CA GGA GACUUGACU   GUca   ca a
      c   g   caaacc  -   aaa -    -    u    A  A   C         -CG    ---  a

Annotation confidence High

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Genome context

chr8: 30162492-30162633 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-24-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-24

Accession	MIMAT0001792
Description	Danio rerio dre-miR-24 mature miRNA
Sequence	80 - UGGCUCAGUUCAGCAGGAACAG - 101
Evidence	experimental cloned [1]
Database links
Predicted targets

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293