Stem-loop dre-mir-27a

Accession

MI0001928

Description

Danio rerio dre-mir-27a precursor miRNA mir-27

Gene
family

RF00644; mir-27

Literature search

10 open access papers mention dre-mir-27a
(104 sentences)

Sequence

17672 reads, 1162 reads per million, 11 experiments

ucuggauaugaugucugcugaaguuucgugaggugcAGGACUUAGCUCACUCUGUGAACAgaucucggauauccuaugUUCACAGUGGCUAAGUUCCGCUccucugaggcccacacucgaaaucagccagg
.((((...((((.((...((..((((((.((((.((.(((((((((.((((..(((((((......((....))..)))))))))))))))))))).)).))))))))))...))...)).)))).)))).

Structure

u    aua    g  ugc  -aa      u    u  A         U    CU       gaucuc  a 
 cugg   ugau uc   ug   guuucg gagg gc GGACUUAGC CACU  GUGAACA      gg u
 ||||   |||| ||   ||   |||||| |||| || ||||||||| ||||  |||||||      ||  
 gacc   acua ag   ac   cggagu cucc CG CUUGAAUCG GUGA  CACUUgu      cc a
g    --g    a  cuc  acc      -    U  C         -    --       ----au  u 

Annotation confidence High

Genome context

chr2: 33902325-33902455 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-27a

Mature dre-miR-27a-3p

• Accession: MIMAT0001796
• Description: Danio rerio dre-miR-27a-3p mature miRNA
• Sequence: 79 - UUCACAGUGGCUAAGUUCCGCU - 100
• Evidence: experimental ; cloned [1]

Mature dre-miR-27a-5p

• Accession: MIMAT0031949
• Description: Danio rerio dre-miR-27a-5p mature miRNA
• Sequence: 37 - AGGACUUAGCUCACUCUGUGAACA - 60
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293