Stem-loop dre-mir-27b

Accession

MI0001929

Description

Danio rerio dre-mir-27b precursor miRNA mir-27

Gene
family

RF00644; mir-27

Literature search

42 open access papers mention dre-mir-27b
(225 sentences)

Sequence

24084464 reads, 20176.0 reads per million, 284 experiments

ucuuuucuagcaggugcAGAGCUUAGCUGAUUGGUGAAcagugauugaacucuuugUUCACAGUGGCUAAGUUCUGCAUcugaggagagga
((((((((..((((((((((((((((((.((((.(((((((.((......)).))))))))))))))))))))))))))))).))))))))

Structure

        ag                  G    G       u  uu 
ucuuuucu  caggugcAGAGCUUAGCU AUUG UGAAcag ga  g
||||||||  |||||||||||||||||| |||| ||||||| ||   
aggagagg  gucUACGUCUUGAAUCGG UGAC ACUUguu cu  a
        -a                  -    -       u  ca 

Annotation confidence High

Genome context

chr8: 30167435-30167525 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-27b

Mature dre-miR-27b-5p

• Accession: MIMAT0031950
• Description: Danio rerio dre-miR-27b-5p mature miRNA
• Sequence: 18 - AGAGCUUAGCUGAUUGGUGAA - 38
• Evidence: not_experimental

Mature dre-miR-27b-3p

• Accession: MIMAT0001797
• Description: Danio rerio dre-miR-27b-3p mature miRNA
• Sequence: 57 - UUCACAGUGGCUAAGUUCUGCAU - 79
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293