Stem-loop dre-mir-27d

Accession

MI0001931

Description

Danio rerio dre-mir-27d precursor miRNA mir-27

Gene
family

RF00644; mir-27

Literature search

8 open access papers mention dre-mir-27d
(20 sentences)

Sequence

9224126 reads, 7461.0 reads per million, 285 experiments

uucugagcgggugCAGAGCUUGGCUGAUUGGUGAAcgugcauggcuuguguuuuugUUCACAGUGGCUAAGUUCUUCAcccgaaaagaa
.(((...((((((.(((((((((((.((((.((((((.((((.....))))...))))))))))))))))))))).))))))...))).

Structure

u   gag      C           G    G      --u    g 
 ucu   cgggug AGAGCUUGGCU AUUG UGAAcg   gcau g
 |||   |||||| ||||||||||| |||| ||||||   |||| c
 aga   gcccAC UCUUGAAUCGG UGAC ACUUgu   ugug u
a   aaa      U           -    -      uuu    u 

Annotation confidence High

Genome context

chr10: 15954727-15954815 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-27d

Mature dre-miR-27d-5p

• Accession: MIMAT0060874
• Description: Danio rerio dre-miR-27d-5p mature miRNA
• Sequence: 14 - CAGAGCUUGGCUGAUUGGUGAA - 35
• Evidence: experimental ; cloned [1]

Mature dre-miR-27d-3p

• Accession: MIMAT0001799
• Description: Danio rerio dre-miR-27d-3p mature miRNA
• Sequence: 57 - UUCACAGUGGCUAAGUUCUUCA - 78
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293