miRBase entry: dre-mir-27e

Stem-loop dre-mir-27e

Accession

MI0001932

Description

Danio rerio dre-mir-27e precursor miRNA mir-27

Gene
family?

RF00644; mir-27

Literature search

6 open access papers mention dre-mir-27e
(18 sentences)

Sequence

2798 reads, 176 reads per million, 11 experiments

gucaucacucgcucacggcgcagagcuuagcuaaucggugagcauugaucccuuaagaaaacugUUCACAGUGGCUAAGUUCAGUGucuggagugaacgggaugac
((((((..((((((..(((((.(((((((((((....(((((((.(..((......))..).)))))))..))))))))))).)))))..))))))....))))))

Structure

      --ac      ac     a           aucg       u ga  cc 
gucauc    ucgcuc  ggcgc gagcuuagcua    gugagca u  uc  u
||||||    ||||||  ||||| |||||||||||    ||||||| |  ||   
caguag    agugag  cuGUG CUUGAAUCGGU    CACUUgu a  ag  u
      ggca      gu     A           --GA       c aa  aa

Annotation confidence High

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Genome context

chr22: 5299951-5300056 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-27e

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-27e

Accession	MIMAT0001800
Description	Danio rerio dre-miR-27e mature miRNA
Sequence	65 - UUCACAGUGGCUAAGUUCAGUG - 86
Evidence	experimental cloned [1]
Database links
Predicted targets

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293