Stem-loop dre-mir-27e

Accession

MI0001932

Description

Danio rerio dre-mir-27e precursor miRNA mir-27

Gene
family

RF00644; mir-27

Literature search

8 open access papers mention dre-mir-27e
(20 sentences)

Sequence

3993722 reads, 3326.0 reads per million, 285 experiments

gucaucacucgcucacggcgcAGAGCUUAGCUAAUCGGUGAGCauugaucccuuaagaaaacugUUCACAGUGGCUAAGUUCAGUGucuggagugaacgggaugac
((((((..((((((..(((((.(((((((((((....(((((((.(..((......))..).)))))))..))))))))))).)))))..))))))....))))))

Structure

      --ac      ac     A           AUCG       u ga  cc 
gucauc    ucgcuc  ggcgc GAGCUUAGCUA    GUGAGCa u  uc  u
||||||    ||||||  ||||| |||||||||||    ||||||| |  ||   
caguag    agugag  cuGUG CUUGAAUCGGU    CACUUgu a  ag  u
      ggca      gu     A           --GA       c aa  aa 

Annotation confidence High

Genome context

chr22: 5299951-5300056 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-27e

Mature dre-miR-27e-5p

• Accession: MIMAT0060875
• Description: Danio rerio dre-miR-27e-5p mature miRNA
• Sequence: 22 - AGAGCUUAGCUAAUCGGUGAGC - 43
• Evidence: experimental ; cloned [1]

Mature dre-miR-27e-3p

• Accession: MIMAT0001800
• Description: Danio rerio dre-miR-27e-3p mature miRNA
• Sequence: 65 - UUCACAGUGGCUAAGUUCAGUG - 86
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293