Stem-loop dre-mir-29b-1

Accession

MI0001933

Description

Danio rerio dre-mir-29b-1 precursor miRNA

Literature search

16 open access papers mention dre-mir-29b-1
(156 sentences)

Sequence

3593500 reads, 828.0 reads per million, 274 experiments

cugcuccuggaaGCUGAAUUCAGAUGGUGCCAUAGAguauuuuauggcaucUAGCACCAUUUGAAAUCAGUGUUccugggccg
..((.((.(((((((((.((((((((((((..((((((........)).)))))))))))))))).))))).)))).))))..

Structure

cu  u  u    -     A            CA    -  auu 
  gc cc ggaa GCUGA UUCAGAUGGUGC  UAGA gu   u
  || || |||| ||||| ||||||||||||  |||| ||    
  cg gg ccUU UGACU AAGUUUACCACG  AUcu cg   u
gc  -  u    G     A            --    a  gua 

Annotation confidence High

Genome context

chr6: 47467910-47467992 [+]

Mature dre-miR-29b-1-5p

• Accession: MIMAT0060876
• Description: Danio rerio dre-miR-29b-1-5p mature miRNA
• Sequence: 13 - GCUGAAUUCAGAUGGUGCCAUAGA - 36
• Evidence: experimental ; cloned [1]

Mature dre-miR-29b-3p

• Accession: MIMAT0001801
• Description: Danio rerio dre-miR-29b-3p mature miRNA
• Sequence: 52 - UAGCACCAUUUGAAAUCAGUGUU - 74
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293