Stem-loop dre-mir-29b-2

Accession

MI0001934

Description

Danio rerio dre-mir-29b-2 precursor miRNA

Literature search

16 open access papers mention dre-mir-29b-2
(155 sentences)

Sequence

3545577 reads, 786.0 reads per million, 273 experiments

ucuuccuccagaugCUGGUUUCACAUGGUGGUUUAGAuguguucuaccaaagucUAGCACCAUUUGAAAUCAGUGUUcuuggggaggg
.(((((((.((((((((((((((.((((((..((((((.((......))..)))))))))))).))))))))))).))).))))))).

Structure

u       c   -           C      GU      -g  uu 
 cuuccuc aga ugCUGGUUUCA AUGGUG  UUAGAu  ug  c
 ||||||| ||| ||||||||||| ||||||  ||||||  ||   
 ggagggg ucU GUGACUAAAGU UACCAC  GAUcug  ac  u
g       u   U           U      --      aa  ca 

Annotation confidence High

Genome context

chr4: 11608196-11608283 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-29b-2

Mature dre-miR-29b-2-5p

• Accession: MIMAT0060877
• Description: Danio rerio dre-miR-29b-2-5p mature miRNA
• Sequence: 15 - CUGGUUUCACAUGGUGGUUUAGA - 37
• Evidence: experimental ; cloned [1]

Mature dre-miR-29b-3p

• Accession: MIMAT0001801
• Description: Danio rerio dre-miR-29b-3p mature miRNA
• Sequence: 55 - UAGCACCAUUUGAAAUCAGUGUU - 77
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293