Stem-loop dre-mir-29a

Accession

MI0001938

Description

Danio rerio dre-mir-29a precursor miRNA

Literature search

72 open access papers mention dre-mir-29a
(215 sentences)

Sequence

3501527 reads, 1134.0 reads per million, 283 experiments

ugaagacccucaucucucucucucucuccccaccaaacgaugACUGAUUUCCUUUGGUGCUUAGAgucccaucugucaucUAGCACCAUUUGAAAUCGGUUAuaaugacuggggaucaauucuuca
((((((....................((((((.......((((((((((((...(((((((.(((.............))))))))))...))))))))))))......)))))).....))))))

Structure

      cccucaucucucucucucuc      ccaaacg            CUU       U   guccc 
ugaaga                    ucccca       augACUGAUUUC   UGGUGCU AGA     a
||||||                    ||||||       ||||||||||||   ||||||| |||     u
acuucu                    aggggu       uAUUGGCUAAAG   ACCACGA Ucu     c
      ---------------uaacu      -caguaa            UUU       -   acugu 

Annotation confidence High

Genome context

chr4: 11606758-11606883 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-29a

Mature dre-miR-29a-5p

• Accession: MIMAT0060878
• Description: Danio rerio dre-miR-29a-5p mature miRNA
• Sequence: 43 - ACUGAUUUCCUUUGGUGCUUAGA - 65
• Evidence: experimental ; cloned [1]

Mature dre-miR-29a-3p

• Accession: MIMAT0001802
• Description: Danio rerio dre-miR-29a-3p mature miRNA
• Sequence: 81 - UAGCACCAUUUGAAAUCGGUUA - 102
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293